PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G051200.1
Common NameB456_001G051200, LOC105785390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 24862.2 Da    PI: 9.8975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G051200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-2077127255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  Gorai.001G051200.1  77 HYRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFETAIEAAKAYDRAAFKLRG 127
                         7********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3276136IPR001471AP2/ERF domain
SMARTSM003801.4E-3777141IPR001471AP2/ERF domain
PROSITE profilePS5103224.48777135IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2377137IPR016177DNA-binding domain
CDDcd000183.85E-3277135No hitNo description
PfamPF008474.9E-1477127IPR001471AP2/ERF domain
PRINTSPR003671.0E-137889IPR001471AP2/ERF domain
PRINTSPR003671.0E-13117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASFGETPSD LELIKQHLFN DFPSMETFLS PPPTPQFHKQ STLSQRRPSI NVTIPPSKVN  60
ITSAATKAIE EHDEKRHYRG VRRRPWGKFA AEIRDPNRKG SRIWLGTFET AIEAAKAYDR  120
AAFKLRGSKA ILNFPLEIGN SNSTEPQPSN KRKREEEEEE RRKVVKKEDV TENVTTTGVC  180
LTPSNWKGFW DSEDMKGIFS IPPLSPLSPF GYSISGLAVM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-3076138163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8948e-36seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487441998e-36
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR9025460.0KR902546.1 Gossypium barbadense cultivar Pima90-53 transcription factor ERFb (ERFb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466924.11e-163PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY908e-68EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0D2LSA71e-163A0A0D2LSA7_G
STRINGfgenesh2_kg.8__1005__AT5G51190.12e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.16e-56ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]